LOCUS NC_009636 3781904 bp DNA circular BCT 03-JUL-2007
DEFINITION Sinorhizobium medicae WSM419, complete genome.
ACCESSION NC_009636
VERSION NC_009636.1 GI:150395228
KEYWORDS .
SOURCE Sinorhizobium medicae WSM419
ORGANISM Sinorhizobium medicae WSM419
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3781904)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M.,
Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Reeve,W. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Sinorhizobium medicae WSM419 chromosome
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3781904)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-JUL-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3781904)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M.,
Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Reeve,W. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (21-JUN-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000738.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4001622
Source DNA and bacteria available from Wayne Reeve
(reeve@murdoch.edu.au)
Contacts: Wayne Reeve (reeve@murdoch.edu.au)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 95406 | 95482 | + | 77 | 150395228 | Smed_R0001 | - | 11 Arg tRNA |
| 127547 | 127622 | - | 76 | 150395228 | Smed_R0002 | - | 12 Thr tRNA |
| 149463 | 149537 | + | 75 | 150395228 | Smed_R0003 | - | 01 Gly tRNA |
| 232539 | 232613 | - | 75 | 150395228 | Smed_R0004 | - | 12 Thr tRNA |
| 238918 | 238993 | + | 76 | 150395228 | Smed_R0005 | - | 17 Phe tRNA |
| 348637 | 348713 | + | 77 | 150395228 | Smed_R0006 | - | 09 His tRNA |
| 397699 | 397772 | - | 74 | 150395228 | Smed_R0007 | - | 05 Gln tRNA |
| 599679 | 599753 | + | 75 | 150395228 | Smed_R0008 | - | 05 Gln tRNA |
| 603503 | 603579 | + | 77 | 150395228 | Smed_R0009 | - | 03 Pro tRNA |
| 717253 | 717342 | - | 90 | 150395228 | Smed_R0010 | - | 08 Ser tRNA |
| 894337 | 894413 | + | 77 | 150395228 | Smed_R0011 | - | 03 Pro tRNA |
| 959330 | 959405 | - | 76 | 150395228 | Smed_R0012 | - | 13 Val tRNA |
| 959865 | 959941 | + | 77 | 150395228 | Smed_R0013 | - | 06 Asp tRNA |
| 960011 | 960087 | + | 77 | 150395228 | Smed_R0014 | - | 06 Asp tRNA |
| 1041875 | 1041950 | + | 76 | 150395228 | Smed_R0015 | - | 12 Thr tRNA |
| 1046202 | 1046286 | + | 85 | 150395228 | Smed_R0016 | - | 18 Tyr tRNA |
| 1046310 | 1046383 | + | 74 | 150395228 | Smed_R0017 | - | 01 Gly tRNA |
| 1049921 | 1049996 | + | 76 | 150395228 | Smed_R0018 | - | 20 Trp tRNA |
| 1095586 | 1095670 | + | 85 | 150395228 | Smed_R0019 | - | 15 Leu tRNA |
| 1258759 | 1258843 | + | 85 | 150395228 | Smed_R0020 | - | 15 Leu tRNA |
| 1392146 | 1392235 | + | 90 | 150395228 | Smed_R0021 | - | 08 Ser tRNA |
| 1435040 | 1435115 | + | 76 | 150395228 | Smed_R0022 | - | 02 Ala tRNA |
| 1436539 | 1436612 | + | 74 | 150395228 | Smed_R0023 | - | 19 Cys tRNA |
| 1438958 | 1439032 | + | 75 | 150395228 | Smed_R0024 | - | 07 Asn tRNA |
| 1456127 | 1456212 | - | 86 | 150395228 | Smed_R0025 | - | 15 Leu tRNA |
| 1506585 | 1506660 | + | 76 | 150395228 | Smed_R0026 | - | 10 Lys tRNA |
| 1527624 | 1527700 | - | 77 | 150395228 | Smed_R0027 | - | 11 Arg tRNA |
| 1528090 | 1528166 | - | 77 | 150395228 | Smed_R0028 | - | 03 Pro tRNA |
| 1531855 | 1531930 | + | 76 | 150395228 | Smed_R0029 | - | 04 Glu tRNA |
| 1532147 | 1532222 | + | 76 | 150395228 | Smed_R0030 | - | 04 Glu tRNA |
| 1532279 | 1532353 | + | 75 | 150395228 | Smed_R0031 | - | 04 Glu tRNA |
| 1532539 | 1532614 | + | 76 | 150395228 | Smed_R0032 | - | 04 Glu tRNA |
| 1984916 | 1984991 | - | 76 | 150395228 | Smed_R0033 | - | 10 Lys tRNA |
| 2151161 | 2151493 | - | 333 | 150395228 | Smed_R0034 | - | RNA component of RNaseP |
| 2295232 | 2295307 | - | 76 | 150395228 | Smed_R0035 | - | 16 Met tRNA |
| 2583865 | 2583941 | - | 77 | 150395228 | Smed_R0036 | - | 16 Met tRNA |
| 2584024 | 2584137 | - | 114 | 150395228 | Smed_R0037 | - | 5S ribosomal RNA |
| 2584372 | 2587011 | - | 2640 | 150395228 | Smed_R0038 | - | 23S ribosomal RNA |
| 2587827 | 2587902 | - | 76 | 150395228 | Smed_R0039 | - | 02 Ala tRNA |
| 2588067 | 2588143 | - | 77 | 150395228 | Smed_R0040 | - | 14 Ile tRNA |
| 2588398 | 2589875 | - | 1478 | 150395228 | Smed_R0041 | - | 16S ribosomal RNA |
| 2622997 | 2623081 | - | 85 | 150395228 | Smed_R0042 | - | 15 Leu tRNA |
| 2697466 | 2697542 | - | 77 | 150395228 | Smed_R0043 | - | 16 Met tRNA |
| 2834043 | 2834117 | + | 75 | 150395228 | Smed_R0044 | - | 13 Val tRNA |
| 2989057 | 2989133 | - | 77 | 150395228 | Smed_R0045 | - | 16 Met tRNA |
| 2989216 | 2989329 | - | 114 | 150395228 | Smed_R0046 | - | 5S ribosomal RNA |
| 2989564 | 2992203 | - | 2640 | 150395228 | Smed_R0047 | - | 23S ribosomal RNA |
| 2993019 | 2993094 | - | 76 | 150395228 | Smed_R0048 | - | 02 Ala tRNA |
| 2993259 | 2993335 | - | 77 | 150395228 | Smed_R0049 | - | 14 Ile tRNA |
| 2993590 | 2995067 | - | 1478 | 150395228 | Smed_R0050 | - | 16S ribosomal RNA |
| 3009945 | 3010021 | + | 77 | 150395228 | Smed_R0051 | - | 11 Arg tRNA |
| 3154830 | 3154919 | - | 90 | 150395228 | Smed_R0052 | - | 08 Ser tRNA |
| 3193426 | 3193500 | - | 75 | 150395228 | Smed_R0053 | - | 01 Gly tRNA |
| 3463168 | 3464645 | + | 1478 | 150395228 | Smed_R0054 | - | 16S ribosomal RNA |
| 3464900 | 3464976 | + | 77 | 150395228 | Smed_R0055 | - | 14 Ile tRNA |
| 3465141 | 3465216 | + | 76 | 150395228 | Smed_R0056 | - | 02 Ala tRNA |
| 3466032 | 3468671 | + | 2640 | 150395228 | Smed_R0057 | - | 23S ribosomal RNA |
| 3468906 | 3469019 | + | 114 | 150395228 | Smed_R0058 | - | 5S ribosomal RNA |
| 3469102 | 3469178 | + | 77 | 150395228 | Smed_R0059 | - | 16 Met tRNA |
| 3625735 | 3625824 | + | 90 | 150395228 | Smed_R0060 | - | 08 Ser tRNA |
| 3636444 | 3636547 | + | 104 | 150395228 | Smed_R0061 | - | SRP RNA; RNA component of signal recognition particle |
| 3662657 | 3662732 | - | 76 | 150395228 | Smed_R0062 | - | 02 Ala tRNA |
| 3670604 | 3670690 | + | 87 | 150395228 | Smed_R0063 | - | 15 Leu tRNA |