LOCUS NC_009512 5959964 bp DNA circular BCT 02-JUL-2007
DEFINITION Pseudomonas putida F1, complete genome.
ACCESSION NC_009512
VERSION NC_009512.1 GI:148545259
KEYWORDS .
SOURCE Pseudomonas putida F1
ORGANISM Pseudomonas putida F1
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 5959964)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Parales,R. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Pseudomonas putida F1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5959964)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (04-JUN-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5959964)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Parales,R. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000712.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000373
Source DNA and bacteria available from Rebecca Parales
(reparales@ucdavis.edu)
Contacts: Rebecca Parales (reparales@ucdavis.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 185124 | 186672 | + | 1549 | 148545259 | Pput_R0001 | - | 16S ribosomal RNA |
| 186953 | 189855 | + | 2903 | 148545259 | Pput_R0002 | - | 23S ribosomal RNA |
| 189979 | 190094 | + | 116 | 148545259 | Pput_R0003 | - | 5S ribosomal RNA |
| 190204 | 190319 | + | 116 | 148545259 | Pput_R0004 | - | 5S ribosomal RNA |
| 265864 | 265940 | - | 77 | 148545259 | Pput_R0005 | - | 11 Arg tRNA |
| 338834 | 338909 | - | 76 | 148545259 | Pput_R0006 | - | 12 Thr tRNA |
| 348720 | 348795 | - | 76 | 148545259 | Pput_R0007 | - | 17 Phe tRNA |
| 482039 | 482115 | - | 77 | 148545259 | Pput_R0008 | - | 16 Met tRNA |
| 539837 | 541385 | + | 1549 | 148545259 | Pput_R0009 | - | 16S ribosomal RNA |
| 541451 | 541527 | + | 77 | 148545259 | Pput_R0010 | - | 14 Ile tRNA |
| 541534 | 541609 | + | 76 | 148545259 | Pput_R0011 | - | 02 Ala tRNA |
| 541844 | 544746 | + | 2903 | 148545259 | Pput_R0012 | - | 23S ribosomal RNA |
| 544881 | 544996 | + | 116 | 148545259 | Pput_R0013 | - | 5S ribosomal RNA |
| 547462 | 547545 | + | 84 | 148545259 | Pput_R0014 | - | 18 Tyr tRNA |
| 547570 | 547643 | + | 74 | 148545259 | Pput_R0015 | - | 01 Gly tRNA |
| 547673 | 547748 | + | 76 | 148545259 | Pput_R0016 | - | 12 Thr tRNA |
| 549075 | 549150 | + | 76 | 148545259 | Pput_R0017 | - | 20 Trp tRNA |
| 717166 | 718714 | + | 1549 | 148545259 | Pput_R0018 | - | 16S ribosomal RNA |
| 718995 | 721897 | + | 2903 | 148545259 | Pput_R0019 | - | 23S ribosomal RNA |
| 722033 | 722148 | + | 116 | 148545259 | Pput_R0020 | - | 5S ribosomal RNA |
| 752653 | 752728 | + | 76 | 148545259 | Pput_R0021 | - | 07 Asn tRNA |
| 752733 | 752809 | + | 77 | 148545259 | Pput_R0022 | - | 03 Pro tRNA |
| 752815 | 752890 | + | 76 | 148545259 | Pput_R0023 | - | 10 Lys tRNA |
| 752937 | 753013 | + | 77 | 148545259 | Pput_R0024 | - | 03 Pro tRNA |
| 753019 | 753094 | + | 76 | 148545259 | Pput_R0025 | - | 10 Lys tRNA |
| 760664 | 760739 | + | 76 | 148545259 | Pput_R0026 | - | 12 Thr tRNA |
| 768920 | 768991 | - | 72 | 148545259 | Pput_R0027 | - | Xaa tRNA |
| 820486 | 820562 | - | 77 | 148545259 | Pput_R0028 | - | 16 Met tRNA |
| 848700 | 848774 | - | 75 | 148545259 | Pput_R0029 | - | 05 Gln tRNA |
| 983562 | 983646 | - | 85 | 148545259 | Pput_R0030 | - | 15 Leu tRNA |
| 1342813 | 1344361 | + | 1549 | 148545259 | Pput_R0031 | - | 16S ribosomal RNA |
| 1344427 | 1344503 | + | 77 | 148545259 | Pput_R0032 | - | 14 Ile tRNA |
| 1344510 | 1344585 | + | 76 | 148545259 | Pput_R0033 | - | 02 Ala tRNA |
| 1344820 | 1347722 | + | 2903 | 148545259 | Pput_R0034 | - | 23S ribosomal RNA |
| 1347857 | 1347972 | + | 116 | 148545259 | Pput_R0035 | - | 5S ribosomal RNA |
| 1398184 | 1398260 | - | 77 | 148545259 | Pput_R0036 | - | 16 Met tRNA |
| 1398395 | 1398471 | - | 77 | 148545259 | Pput_R0037 | - | 16 Met tRNA |
| 1398606 | 1398682 | - | 77 | 148545259 | Pput_R0038 | - | 16 Met tRNA |
| 1420230 | 1420305 | + | 76 | 148545259 | Pput_R0039 | - | 10 Lys tRNA |
| 1437688 | 1437777 | + | 90 | 148545259 | Pput_R0040 | - | 08 Ser tRNA |
| 1620544 | 1620634 | + | 91 | 148545259 | Pput_R0041 | - | 08 Ser tRNA |
| 1620741 | 1620817 | + | 77 | 148545259 | Pput_R0042 | - | 11 Arg tRNA |
| 1620890 | 1620966 | + | 77 | 148545259 | Pput_R0043 | - | 11 Arg tRNA |
| 1621041 | 1621117 | + | 77 | 148545259 | Pput_R0044 | - | 11 Arg tRNA |
| 1621191 | 1621267 | + | 77 | 148545259 | Pput_R0045 | - | 11 Arg tRNA |
| 1624589 | 1624665 | + | 77 | 148545259 | Pput_R0046 | - | 11 Arg tRNA |
| 1786688 | 1786804 | + | 117 | 148545259 | Pput_R0047 | - | SRP RNA; RNA component of signal recognition particle |
| 2022122 | 2022197 | + | 76 | 148545259 | Pput_R0048 | - | 01 Gly tRNA |
| 2113660 | 2113747 | + | 88 | 148545259 | Pput_R0049 | - | 08 Ser tRNA |
| 2188877 | 2188950 | + | 74 | 148545259 | Pput_R0050 | - | 19 Cys tRNA |
| 2206571 | 2206655 | - | 85 | 148545259 | Pput_R0051 | - | 15 Leu tRNA |
| 3630810 | 3630886 | - | 77 | 148545259 | Pput_R0052 | - | 03 Pro tRNA |
| 3654686 | 3654762 | - | 77 | 148545259 | Pput_R0053 | - | 13 Val tRNA |
| 3654935 | 3655011 | - | 77 | 148545259 | Pput_R0054 | - | 13 Val tRNA |
| 3766514 | 3766588 | - | 75 | 148545259 | Pput_R0055 | - | 05 Gln tRNA |
| 3877213 | 3877288 | - | 76 | 148545259 | Pput_R0056 | - | 09 His tRNA |
| 3877325 | 3877409 | - | 85 | 148545259 | Pput_R0057 | - | 15 Leu tRNA |
| 3877462 | 3877537 | - | 76 | 148545259 | Pput_R0058 | - | 09 His tRNA |
| 3877579 | 3877655 | - | 77 | 148545259 | Pput_R0059 | - | 11 Arg tRNA |
| 3909594 | 3909720 | - | 127 | 148545259 | Pput_R0060 | - | 5S ribosomal RNA |
| 3909834 | 3912738 | - | 2905 | 148545259 | Pput_R0061 | - | 23S ribosomal RNA |
| 3912980 | 3913055 | - | 76 | 148545259 | Pput_R0062 | - | 02 Ala tRNA |
| 3913080 | 3913156 | - | 77 | 148545259 | Pput_R0063 | - | 14 Ile tRNA |
| 3913241 | 3914778 | - | 1538 | 148545259 | Pput_R0064 | - | 16S ribosomal RNA |
| 4043269 | 4043345 | + | 77 | 148545259 | Pput_R0065 | - | 03 Pro tRNA |
| 4213351 | 4213427 | - | 77 | 148545259 | Pput_R0066 | - | 06 Asp tRNA |
| 4213569 | 4213645 | - | 77 | 148545259 | Pput_R0067 | - | 06 Asp tRNA |
| 4213745 | 4213821 | - | 77 | 148545259 | Pput_R0068 | - | 06 Asp tRNA |
| 4213887 | 4213962 | - | 76 | 148545259 | Pput_R0069 | - | 13 Val tRNA |
| 4242338 | 4242413 | - | 76 | 148545259 | Pput_R0070 | - | 04 Glu tRNA |
| 4242456 | 4242531 | - | 76 | 148545259 | Pput_R0071 | - | 02 Ala tRNA |
| 4242593 | 4242668 | - | 76 | 148545259 | Pput_R0072 | - | 04 Glu tRNA |
| 4242711 | 4242786 | - | 76 | 148545259 | Pput_R0073 | - | 02 Ala tRNA |
| 4242838 | 4242913 | - | 76 | 148545259 | Pput_R0074 | - | 04 Glu tRNA |
| 4242986 | 4243061 | - | 76 | 148545259 | Pput_R0075 | - | 02 Ala tRNA |
| 4251314 | 4251389 | + | 76 | 148545259 | Pput_R0076 | - | 07 Asn tRNA |
| 4316361 | 4316436 | - | 76 | 148545259 | Pput_R0077 | - | 01 Gly tRNA |
| 4316522 | 4316597 | - | 76 | 148545259 | Pput_R0078 | - | 01 Gly tRNA |
| 4316601 | 4316676 | - | 76 | 148545259 | Pput_R0079 | - | 04 Glu tRNA |
| 4316769 | 4316844 | - | 76 | 148545259 | Pput_R0080 | - | 01 Gly tRNA |
| 4316847 | 4316922 | - | 76 | 148545259 | Pput_R0081 | - | 04 Glu tRNA |
| 4347692 | 4347781 | - | 90 | 148545259 | Pput_R0082 | - | 08 Ser tRNA |
| 4531511 | 4531587 | - | 77 | 148545259 | Pput_R0083 | - | 06 Asp tRNA |
| 4531601 | 4531676 | - | 76 | 148545259 | Pput_R0084 | - | 13 Val tRNA |
| 4531847 | 4531923 | - | 77 | 148545259 | Pput_R0085 | - | 06 Asp tRNA |
| 4531937 | 4532012 | - | 76 | 148545259 | Pput_R0086 | - | 13 Val tRNA |
| 4825075 | 4825148 | + | 74 | 148545259 | Pput_R0087 | - | 01 Gly tRNA |
| 4918882 | 4919176 | - | 295 | 148545259 | Pput_R0088 | - | RNA component of RNaseP |
| 5071220 | 5071346 | - | 127 | 148545259 | Pput_R0089 | - | 5S ribosomal RNA |
| 5071460 | 5074364 | - | 2905 | 148545259 | Pput_R0090 | - | 23S ribosomal RNA |
| 5074606 | 5074681 | - | 76 | 148545259 | Pput_R0091 | - | 02 Ala tRNA |
| 5074706 | 5074782 | - | 77 | 148545259 | Pput_R0092 | - | 14 Ile tRNA |
| 5074867 | 5076404 | - | 1538 | 148545259 | Pput_R0093 | - | 16S ribosomal RNA |
| 5124893 | 5124969 | - | 77 | 148545259 | Pput_R0094 | - | 16 Met tRNA |
| 5125070 | 5125155 | - | 86 | 148545259 | Pput_R0095 | - | 15 Leu tRNA |
| 5154291 | 5154679 | + | 389 | 148545259 | Pput_R0096 | - | tmRNA |
| 5331494 | 5331580 | + | 87 | 148545259 | Pput_R0097 | - | 15 Leu tRNA |
| 5331669 | 5331755 | + | 87 | 148545259 | Pput_R0098 | - | 15 Leu tRNA |