ФЭНДОМ


   LOCUS       NC_009381            4517345 bp    DNA     circular BCT 08-AUG-2007
   DEFINITION  Yersinia pestis Pestoides F, complete genome.
   ACCESSION   NC_009381
   VERSION     NC_009381.1  GI:145597324
   KEYWORDS    .
   SOURCE      Yersinia pestis Pestoides F
     ORGANISM  Yersinia pestis Pestoides F
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Yersinia.
   REFERENCE   1  (bases 1 to 4517345)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Di
               Bartolo,G., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Worsham,P., Chu,M., Bearden,S.,
               Garcia,E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Yersinia pestis Pestoides F
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4517345)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-APR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4517345)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S.,
               Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Worsham,P., Chu,M., Bearden,S., Garcia,E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (05-FEB-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000668.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2773191
               Source DNA and bacteria available from Emilio Garcia
               (garcia12@llnl.gov)
               Contacts: Emilio Garcia (garcia12@llnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
172801 174355 + 1555 145597324 YPDSF_R0001 - 16S ribosomal RNA
174446 174522 + 77 145597324 YPDSF_R0002 - 14</sub> Ile tRNA
174574 174649 + 76 145597324 YPDSF_R0003 - 02</sub> Ala tRNA
174868 177776 + 2909 145597324 YPDSF_R0004 - 23S ribosomal RNA
177881 178006 + 126 145597324 YPDSF_R0005 - 5S ribosomal RNA
178015 178090 + 76 145597324 YPDSF_R0006 - 12</sub> Thr tRNA
178123 178254 + 132 145597324 YPDSF_R0005b - 5S ribosomal RNA
393066 393440 + 375 145597324 YPDSF_R0007 - RNA component of RNaseP
480907 480983 - 77 145597324 YPDSF_R0008 - 16</sub> Met tRNA
618483 618558 - 76 145597324 YPDSF_R0010 - 17</sub> Phe tRNA
679058 679239 - 182 145597324 YPDSF_R0011 - 6S RNA
709698 709771 + 74 145597324 YPDSF_R0012 - 01</sub> Gly tRNA
854553 854629 - 77 145597324 YPDSF_R0013 - 13</sub> Val tRNA
854689 854765 - 77 145597324 YPDSF_R0014 - 13</sub> Val tRNA
1094068 1094152 + 85 145597324 YPDSF_R0015 - 18</sub> Tyr tRNA
1226610 1226699 + 90 145597324 YPDSF_R0016 - 08</sub> Ser tRNA
1235020 1235109 + 90 145597324 YPDSF_R0017 - 08</sub> Ser tRNA
1364837 1364912 + 76 145597324 YPDSF_R0018 - 07</sub> Asn tRNA
1420857 1420942 - 86 145597324 YPDSF_R0019 - 15</sub> Leu tRNA
1420953 1421026 - 74 145597324 YPDSF_R0020 - 19</sub> Cys tRNA
1421079 1421154 - 76 145597324 YPDSF_R0021 - 01</sub> Gly tRNA
1427603 1427678 - 76 145597324 YPDSF_R0022 - 10</sub> Lys tRNA
1502736 1502985 + 250 145597324 YPDSF_R0023 - SraC_RyeA RNA
1502780 1502875 - 96 145597324 YPDSF_R0024 - RyeB RNA
1557478 1557553 + 76 145597324 YPDSF_R0025 - 07</sub> Asn tRNA
1568500 1568575 + 76 145597324 YPDSF_R0026 - 07</sub> Asn tRNA
1725215 1725302 - 88 145597324 YPDSF_R0027 - 08</sub> Ser tRNA
1826356 1826432 - 77 145597324 YPDSF_R0028 - 06</sub> Asp tRNA
1833752 1833828 - 77 145597324 YPDSF_R0029 - 06</sub> Asp tRNA
1833949 1834072 - 124 145597324 YPDSF_R0030 - 5S ribosomal RNA
1834177 1837085 - 2909 145597324 YPDSF_R0031 - 23S ribosomal RNA
1837338 1837413 - 76 145597324 YPDSF_R0032 - 04</sub> Glu tRNA
1837547 1839092 - 1546 145597324 YPDSF_R0033 - 16S ribosomal RNA
1879200 1879481 - 282 145597324 YPDSF_R0034 - regulatory RNA csrB
1891469 1891545 + 77 145597324 YPDSF_R0035 - 16</sub> Met tRNA
1891669 1891745 + 77 145597324 YPDSF_R0036 - 16</sub> Met tRNA
1891869 1891945 + 77 145597324 YPDSF_R0037 - 16</sub> Met tRNA
2287099 2287173 - 75 145597324 YPDSF_R0039 - 11</sub> Arg tRNA
2358409 2358484 - 76 145597324 YPDSF_R0040 - 10</sub> Lys tRNA
2358684 2358759 - 76 145597324 YPDSF_R0041 - 13</sub> Val tRNA
2358804 2358879 - 76 145597324 YPDSF_R0042 - 13</sub> Val tRNA
2358916 2358991 - 76 145597324 YPDSF_R0043 - 13</sub> Val tRNA
2360913 2360988 + 76 145597324 YPDSF_R0044 - 02</sub> Ala tRNA
2562259 2562423 + 165 145597324 YPDSF_R0045 - tke1 RNA
2776103 2776179 + 77 145597324 YPDSF_R0046 - 03</sub> Pro tRNA
2808298 2808373 - 76 145597324 YPDSF_R0047 - 12</sub> Thr tRNA
2808379 2808466 - 88 145597324 YPDSF_R0048 - 08</sub> Ser tRNA
2810228 2810362 + 135 145597324 YPDSF_R0049 - antisense RNA affecting ompF expression
2918258 2918327 - 70 145597324 YPDSF_R0050 - 10</sub> Lys tRNA
2918425 2918494 - 70 145597324 YPDSF_R0051 - Xaa tRNA
2918523 2918598 - 76 145597324 YPDSF_R0052 - 10</sub> Lys tRNA
2918626 2918701 - 76 145597324 YPDSF_R0053 - 10</sub> Lys tRNA
2946509 2946872 + 364 145597324 YPDSF_R0054 - tmRNA
2981842 2981918 + 77 145597324 YPDSF_R0055 - 16</sub> Met tRNA
2981926 2982010 + 85 145597324 YPDSF_R0056 - 15</sub> Leu tRNA
2982040 2982114 + 75 145597324 YPDSF_R0057 - 05</sub> Gln tRNA
2982198 2982272 + 75 145597324 YPDSF_R0058 - 05</sub> Gln tRNA
2982305 2982381 + 77 145597324 YPDSF_R0059 - 16</sub> Met tRNA
2982387 2982461 + 75 145597324 YPDSF_R0060 - 05</sub> Gln tRNA
3074560 3074636 - 77 145597324 YPDSF_R0061 - 11</sub> Arg tRNA
3144671 3144790 - 120 145597324 YPDSF_R0062 - SRP RNA
3300770 3300904 - 135 145597324 YPDSF_R0063 - 5S ribosomal RNA
3301001 3303909 - 2909 145597324 YPDSF_R0064 - 23S ribosomal RNA
3304162 3304237 - 76 145597324 YPDSF_R0065 - 04</sub> Glu tRNA
3304371 3305916 - 1546 145597324 YPDSF_R0066 - 16S ribosomal RNA
3471164 3471256 + 93 145597324 YPDSF_R0067 - 08</sub> Ser tRNA
3471265 3471341 + 77 145597324 YPDSF_R0068 - 11</sub> Arg tRNA
3471399 3471475 + 77 145597324 YPDSF_R0069 - 11</sub> Arg tRNA
3651513 3651599 + 87 145597324 YPDSF_R0070 - 15</sub> Leu tRNA
3702564 3702648 - 85 145597324 YPDSF_R0071 - 15</sub> Leu tRNA
3759736 3759909 + 174 145597324 YPDSF_R0072 - SraG RNA
3865087 3865163 - 77 145597324 YPDSF_R0073 - 03</sub> Pro tRNA
3876787 3876921 - 135 145597324 YPDSF_R0074 - 5S ribosomal RNA
3877018 3879926 - 2909 145597324 YPDSF_R0075 - 23S ribosomal RNA
3880145 3880220 - 76 145597324 YPDSF_R0076 - 02</sub> Ala tRNA
3880272 3880348 - 77 145597324 YPDSF_R0077 - 14</sub> Ile tRNA
3880448 3881993 - 1546 145597324 YPDSF_R0078 - 16S ribosomal RNA
3981278 3981354 - 77 145597324 YPDSF_R0079 - 03</sub> Pro tRNA
3981430 3981516 - 87 145597324 YPDSF_R0080 - 15</sub> Leu tRNA
3981533 3981608 - 76 145597324 YPDSF_R0081 - 09</sub> His tRNA
3981692 3981768 - 77 145597324 YPDSF_R0082 - 11</sub> Arg tRNA
4039087 4039162 - 76 145597324 YPDSF_R0083 - 20</sub> Trp tRNA
4039171 4039247 - 77 145597324 YPDSF_R0084 - 06</sub> Asp tRNA
4039366 4039493 - 128 145597324 YPDSF_R0085 - 5S ribosomal RNA
4039596 4042504 - 2909 145597324 YPDSF_R0086 - 23S ribosomal RNA
4042757 4042832 - 76 145597324 YPDSF_R0087 - 04</sub> Glu tRNA
4042966 4044511 - 1546 145597324 YPDSF_R0088 - 16S ribosomal RNA
4080462 4080538 - 77 145597324 YPDSF_R0090 - 16</sub> Met tRNA
4080599 4080685 - 87 145597324 YPDSF_R0091 - 15</sub> Leu tRNA
4145290 4145365 - 76 145597324 YPDSF_R0092 - 01</sub> Gly tRNA
4175258 4175333 + 76 145597324 YPDSF_R0093 - 17</sub> Phe tRNA
4279835 4279969 - 135 145597324 YPDSF_R0094 - 5S ribosomal RNA
4280066 4282974 - 2909 145597324 YPDSF_R0095 - 23S ribosomal RNA
4283227 4283302 - 76 145597324 YPDSF_R0096 - 04</sub> Glu tRNA
4283436 4284981 - 1546 145597324 YPDSF_R0097 - 16S ribosomal RNA
4314900 4314975 - 76 145597324 YPDSF_R0098 - 12</sub> Thr tRNA
4314982 4315056 - 75 145597324 YPDSF_R0099 - 01</sub> Gly tRNA
4315206 4315290 - 85 145597324 YPDSF_R0100 - 18</sub> Tyr tRNA
4315309 4315384 - 76 145597324 YPDSF_R0101 - 12</sub> Thr tRNA
4340523 4340613 - 91 145597324 YPDSF_R0102 - Sec tRNA
4456008 4456262 - 255 145597324 YPDSF_R0103 - regulatory RNA CsrC
4457400 4457507 - 108 145597324 YPDSF_R0104 - Spot 42 RNA
4465985 4466119 - 135 145597324 YPDSF_R0105 - 5S ribosomal RNA
4466216 4469124 - 2909 145597324 YPDSF_R0106 - 23S ribosomal RNA
4469377 4469452 - 76 145597324 YPDSF_R0107 - 04</sub> Glu tRNA
4469586 4471131 - 1546 145597324 YPDSF_R0108 - 16S ribosomal RNA

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