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   LOCUS       NC_009089            4290252 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Clostridium difficile 630, complete genome.
   ACCESSION   NC_009089
   VERSION     NC_009089.1  GI:126697566
   KEYWORDS    complete genome.
   SOURCE      Clostridium difficile 630
     ORGANISM  Clostridium difficile 630
               Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
               Clostridium.
   REFERENCE   1
     AUTHORS   Sebaihia,M., Wren,B.W., Mullany,P., Fairweather,N.F., Minton,N.,
               Stabler,R., Thomson,N.R., Roberts,A.P., Cerdeno-Tarraga,A.M.,
               Wang,H., Holden,M.T., Wright,A., Churcher,C., Quail,M.A., Baker,S.,
               Bason,N., Brooks,K., Chillingworth,T., Cronin,A., Davis,P.,
               Dowd,L., Fraser,A., Feltwell,T., Hance,Z., Holroyd,S., Jagels,K.,
               Moule,S., Mungall,K., Price,C., Rabbinowitsch,E., Sharp,S.,
               Simmonds,M., Stevens,K., Unwin,L., Whithead,S., Dupuy,B.,
               Dougan,G., Barrell,B. and Parkhill,J.
     TITLE     The multidrug-resistant human pathogen Clostridium difficile has a
               highly mobile, mosaic genome
     JOURNAL   Nat. Genet. 38 (7), 779-786 (2006)
      PUBMED   16804543
   REFERENCE   2
     AUTHORS   Sebaihia,M.
     TITLE     The multidrug resistant human pathogen Clostridium difficile has a
               highly mobile, mosaic genome
     JOURNAL   Unpublished
   REFERENCE   3  (bases 1 to 4290252)
     AUTHORS   Sebaihia,M.
     TITLE     Direct Submission
     JOURNAL   Submitted (19-DEC-2005) Sebaihia M., Sulston Laboratories, Wellcome
               Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton,
               Cambridge, CB10 1SA, UNITED KINGDOM
   REFERENCE   4  (bases 1 to 4290252)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (21-JAN-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AM180355.
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
10812 12318 + 1507 126697566 CDr001 - 16S ribosomal RNA
12372 12444 + 73 126697566 CDt001 - Anticodon: TGC
12822 15720 + 2899 126697566 CDr002 - 23S ribosomal RNA
15839 15968 + 130 126697566 CDr003 - 5S ribosomal RNA
17634 17855 + 222 126697566 CDs001 -
20000 20088 + 89 126697566 CDt002 - Anticodon: GGA
20243 20343 + 101 126697566 CDs002 -
25267 26773 + 1507 126697566 CDr004 - 16S ribosomal RNA
27034 29932 + 2899 126697566 CDr005 - 23S ribosomal RNA
30115 30233 + 119 126697566 CDr006 - 5S ribosomal RNA
30237 30308 + 72 126697566 CDt003 - Anticodon: GTT
30318 30403 + 86 126697566 CDt004 - Anticodon: TAA
30419 30491 + 73 126697566 CDt005 - Anticodon: CAT
30502 30573 + 72 126697566 CDt006 - Anticodon: TTC
30586 30656 + 71 126697566 CDt007 - Anticodon: TCC
30665 30737 + 73 126697566 CDt008 - Anticodon: TAC
30746 30819 + 74 126697566 CDt009 - Anticodon: GTC
30832 30903 + 72 126697566 CDt010 - Anticodon: TGT
30921 31002 + 82 126697566 CDt011 - Anticodon: GTA
31015 31095 + 81 126697566 CDt012 - Anticodon: TAG
31128 31201 + 74 126697566 CDt013 - Anticodon: TCT
31212 31284 + 73 126697566 CDt014 - Anticodon: TTG
31375 31460 + 86 126697566 CDt015 - Anticodon: TGA
31467 31539 + 73 126697566 CDt016 - Anticodon: GAA
31549 31622 + 74 126697566 CDt017 - Anticodon: CAT
31637 31710 + 74 126697566 CDt018 - Anticodon: CAT
31737 31810 + 74 126697566 CDt019 - Anticodon: TGG
31821 31894 + 74 126697566 CDt020 - Anticodon: GTG
31906 31978 + 73 126697566 CDt021 - Anticodon: TTT
31989 32059 + 71 126697566 CDt022 - Anticodon: GCA
32069 32140 + 72 126697566 CDt023 - Anticodon: GTT
32149 32234 + 86 126697566 CDt024 - Anticodon: TAA
32250 32322 + 73 126697566 CDt025 - Anticodon: CAT
32333 32404 + 72 126697566 CDt026 - Anticodon: TTC
32417 32487 + 71 126697566 CDt027 - Anticodon: TCC
32496 32568 + 73 126697566 CDt028 - Anticodon: TAC
32577 32650 + 74 126697566 CDt029 - Anticodon: GTC
32663 32734 + 72 126697566 CDt030 - Anticodon: TGT
32752 32833 + 82 126697566 CDt031 - Anticodon: GTA
32846 32926 + 81 126697566 CDt032 - Anticodon: TAG
32953 33024 + 72 126697566 CDt033 - Anticodon: GCC
33052 33125 + 74 126697566 CDt034 - Anticodon: TCT
33138 33210 + 73 126697566 CDt035 - Anticodon: TTG
33222 33294 + 73 126697566 CDt036 - Anticodon: TTT
33300 33385 + 86 126697566 CDt037 - Anticodon: TGA
33392 33464 + 73 126697566 CDt038 - Anticodon: GAA
33474 33547 + 74 126697566 CDt039 - Anticodon: CAT
33562 33635 + 74 126697566 CDt040 - Anticodon: CAT
33656 33729 + 74 126697566 CDt041 - Anticodon: GTG
33741 33813 + 73 126697566 CDt042 - Anticodon: TTT
33824 33894 + 71 126697566 CDt043 - Anticodon: GCA
33905 33978 + 74 126697566 CDt044 - Anticodon: ACG
33994 34066 + 73 126697566 CDt045 - Anticodon: TAC
73019 73242 + 224 126697566 CDs003 -
124152 125658 + 1507 126697566 CDr007 - 16S ribosomal RNA
125712 125784 + 73 126697566 CDt046 - Anticodon: TGC
126161 129059 + 2899 126697566 CDr008 - 23S ribosomal RNA
129193 129311 + 119 126697566 CDr009 - 5S ribosomal RNA
129315 129386 + 72 126697566 CDt047 - Anticodon: GTT
129394 129465 + 72 126697566 CDt048 - Anticodon: TTC
129474 129546 + 73 126697566 CDt049 - Anticodon: TAC
129555 129628 + 74 126697566 CDt050 - Anticodon: GTC
129642 129713 + 72 126697566 CDt051 - Anticodon: TGT
129731 129812 + 82 126697566 CDt052 - Anticodon: GTA
129825 129895 + 71 126697566 CDt053 - Anticodon: TCC
129909 129982 + 74 126697566 CDt054 - Anticodon: TCT
129995 130067 + 73 126697566 CDt055 - Anticodon: TTG
130082 130154 + 73 126697566 CDt056 - Anticodon: TTT
130160 130245 + 86 126697566 CDt057 - Anticodon: TGA
130266 130353 + 88 126697566 CDt058 - Anticodon: GCT
130365 130438 + 74 126697566 CDt059 - Anticodon: TGG
130527 130599 + 73 126697566 CDt060 - Anticodon: CCA
130663 130736 + 74 126697566 CDt061 - Anticodon: TGG
130746 130819 + 74 126697566 CDt062 - Anticodon: GAT
130826 130898 + 73 126697566 CDt063 - Anticodon: GAA
130909 130982 + 74 126697566 CDt064 - Anticodon: CAT
131099 132605 + 1507 126697566 CDr010 - 16S ribosomal RNA
132659 132731 + 73 126697566 CDt065 - Anticodon: TGC
133108 136006 + 2899 126697566 CDr011 - 23S ribosomal RNA
136134 136253 + 120 126697566 CDr012 - 5S ribosomal RNA
141709 143215 + 1507 126697566 CDr013 - 16S ribosomal RNA
143269 143341 + 73 126697566 CDt066 - Anticodon: TGC
143657 146555 + 2899 126697566 CDr014 - 23S ribosomal RNA
146758 146877 + 120 126697566 CDr015 - 5S ribosomal RNA
146879 146964 + 86 126697566 CDt067 - Anticodon: TAA
146979 147052 + 74 126697566 CDt068 - Anticodon: CAT
147164 148670 + 1507 126697566 CDr016 - 16S ribosomal RNA
148724 148796 + 73 126697566 CDt069 - Anticodon: TGC
149051 151949 + 2899 126697566 CDr017 - 23S ribosomal RNA
152068 152197 + 130 126697566 CDr018 - 5S ribosomal RNA
152201 152272 + 72 126697566 CDt070 - Anticodon: GTT
152281 152366 + 86 126697566 CDt071 - Anticodon: TAA
152382 152454 + 73 126697566 CDt072 - Anticodon: CAT
152465 152536 + 72 126697566 CDt073 - Anticodon: TTC
152554 152624 + 71 126697566 CDt074 - Anticodon: TCC
152633 152705 + 73 126697566 CDt075 - Anticodon: TAC
152714 152787 + 74 126697566 CDt076 - Anticodon: GTC
152801 152872 + 72 126697566 CDt077 - Anticodon: GCC
152885 152958 + 74 126697566 CDt078 - Anticodon: TCT
163160 163327 + 168 126697566 CDs004 -
174147 174250 + 104 126697566 CDs005 -
196732 196849 + 118 126697566 CDs006 -
256217 256319 + 103 126697566 CDs007 -
377339 378845 + 1507 126697566 CDr019 - 16S ribosomal RNA
379066 381964 + 2899 126697566 CDr020 - 23S ribosomal RNA
382093 382212 + 120 126697566 CDr021 - 5S ribosomal RNA
391011 391203 + 193 126697566 CDs008 -
596106 596592 + 487 126697566 CDs009 -
596597 596675 + 79 126697566 CDs010 -
596684 596734 + 51 126697566 CDs011 -
598650 598660 + 11 126697566 CDs012 -
598662 598746 + 85 126697566 CDs013 -
598664 598697 + 34 126697566 CDs014 -
598701 598743 + 43 126697566 CDs015 -
683173 683427 + 255 126697566 CDs016 -
727944 728413 + 470 126697566 CDs017 -
849440 849690 + 251 126697566 CDs018 -
907922 908009 + 88 126697566 CDt079 - Anticodon: GCT
917371 917598 + 228 126697566 CDs019 -
990470 990939 + 470 126697566 CDs020 -
1152624 1152886 + 263 126697566 CDs021 -
1209213 1210719 + 1507 126697566 CDr022 - 16S ribosomal RNA
1211104 1214003 + 2900 126697566 CDr023 - 23S ribosomal RNA
1214096 1214166 + 71 126697566 CDt080 - Anticodon: TCC
1214179 1214298 + 120 126697566 CDr024 - 5S ribosomal RNA
1326335 1326419 - 85 126697566 CDt081 - Anticodon: CAA
1364065 1364171 + 107 126697566 CDs022 -
1488489 1488742 + 254 126697566 CDs023 -
1521545 1522014 + 470 126697566 CDs024 -
1724139 1724245 + 107 126697566 CDs025 -
1736753 1737222 + 470 126697566 CDs026 -
1762889 1763157 + 269 126697566 CDs027 -
1810573 1810861 + 289 126697566 CDs028 -
1818880 1819348 + 469 126697566 CDs029 -
1830948 1831204 + 257 126697566 CDs030 -
1831254 1831505 + 252 126697566 CDs031 -
1854584 1854677 + 94 126697566 CDs032 -
1917499 1917604 - 106 126697566 CDs033 -
1918846 1919022 + 177 126697566 CDs034 -
1921006 1921086 + 81 126697566 CDt082 - Anticodon: TAG
1930135 1930604 + 470 126697566 CDs035 -
1973231 1973352 - 122 126697566 CDs036 -
1976113 1976224 + 112 126697566 CDs037 -
1992919 1993388 + 470 126697566 CDs038 -
2055462 2055740 + 279 126697566 CDs039 -
2066659 2066883 + 225 126697566 CDs040 -
2102880 2103349 + 470 126697566 CDs041 -
2110692 2110794 + 103 126697566 CDs042 -
2285202 2285301 - 100 126697566 CDs043 -
2294385 2294663 - 279 126697566 CDs044 -
2347170 2347400 - 231 126697566 CDs045 -
2368975 2369143 - 169 126697566 CDs046 -
2436110 2436208 - 99 126697566 CDs047 -
2451328 2451572 + 245 126697566 CDs048 -
2598418 2598668 - 251 126697566 CDs049 -
2694683 2694785 - 103 126697566 CDs050 -
2886067 2886295 - 229 126697566 CDs051 -
2915733 2915947 - 215 126697566 CDs052 -
2954861 2955331 - 471 126697566 CDs053 -
3017752 3018007 - 256 126697566 CDs054 -
3027704 3027953 - 250 126697566 CDs055 -
3114793 3115065 - 273 126697566 CDs056 -
3148001 3148211 - 211 126697566 CDs057 -
3149218 3149289 - 72 126697566 CDt083 - Anticodon: TGT
3149385 3152283 - 2899 126697566 CDr025 - 23S ribosomal RNA
3152566 3154072 - 1507 126697566 CDr026 - 16S ribosomal RNA
3484931 3485112 - 182 126697566 CDs058 -
3607770 3607949 - 180 126697566 CDs059 -
3687389 3687738 - 350 126697566 CDs060 -
3773053 3773227 + 175 126697566 CDs061 -
3800624 3801050 - 427 126697566 CDs062 -
3800718 3800825 - 108 126697566 CDs063 -
3861645 3861760 + 116 126697566 CDs064 -
4004287 4004406 - 120 126697566 CDr027 - 5S ribosomal RNA
4004533 4007432 - 2900 126697566 CDr028 - 23S ribosomal RNA
4007692 4009197 - 1506 126697566 CDr029 - 16S ribosomal RNA
4027376 4027555 - 180 126697566 CDs065 -
4136360 4136623 - 264 126697566 CDs066 -
4146943 4147062 - 120 126697566 CDr030 - 5S ribosomal RNA
4147189 4150087 - 2899 126697566 CDr031 - 23S ribosomal RNA
4150397 4151903 - 1507 126697566 CDr032 - 16S ribosomal RNA
4265536 4265607 - 72 126697566 CDt084 - Anticodon: TGT
4265644 4265716 - 73 126697566 CDt085 - Anticodon: TAC
4265724 4265795 - 72 126697566 CDt086 - Anticodon: TTC
4265805 4265877 - 73 126697566 CDt087 - Anticodon: TTT
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