ФЭНДОМ


   LOCUS       NC_008528            1780517 bp    DNA     circular BCT 31-OCT-2006
   DEFINITION  Oenococcus oeni PSU-1, complete genome.
   ACCESSION   NC_008528
   VERSION     NC_008528.1  GI:116490126
   KEYWORDS    .
   SOURCE      Oenococcus oeni PSU-1
     ORGANISM  Oenococcus oeni PSU-1
               Bacteria; Firmicutes; Lactobacillales; Oenococcus.
   REFERENCE   1  (bases 1 to 1780517)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 1780517)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1780517)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000411.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662182
               Source DNA and bacteria available from David Mills
               (damills@ucdavis.edu)
               Contacts: David Mills (damills@ucdavis.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)
               URL -- http://www.fidelitysystems.com  Project Information
               available at: http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
97797 97869 - 73 116490126 OEOE_t0104 - 10</sub> Lys tRNA
184055 184127 + 73 116490126 OEOE_t0193 - 07</sub> Asn tRNA
184194 184266 + 73 116490126 OEOE_t0194 - 12</sub> Thr tRNA
389125 389197 - 73 116490126 OEOE_t0403 - 11</sub> Arg tRNA
393198 393270 + 73 116490126 OEOE_t0409 - 11</sub> Arg tRNA
429554 429627 - 74 116490126 OEOE_t0442 - 12</sub> Thr tRNA
431415 431499 - 85 116490126 OEOE_t0445 - 15</sub> Leu tRNA
489667 490016 - 350 116490126 OEOE_s0505 - tmRNA
490141 490212 + 72 116490126 OEOE_t0506 - 04</sub> Glu tRNA
512229 512316 + 88 116490126 OEOE_t0530 - 08</sub> Ser tRNA
616309 617875 + 1567 116490126 OEOE_r0653 - 16S ribosomal RNA
617973 618045 + 73 116490126 OEOE_t0654 - 02</sub> Ala tRNA
618261 621148 + 2888 116490126 OEOE_r0655 - 23S ribosomal RNA
621245 621280 + 36 116490126 OEOE_r0656 - 5S ribosomal RNA
646054 646130 + 77 116490126 OEOE_t0685 - 10</sub> Lys tRNA
657699 657773 + 75 116490126 OEOE_t0698 - 04</sub> Glu tRNA
729898 729969 - 72 116490126 OEOE_t0781 - 01</sub> Gly tRNA
763895 763965 + 71 116490126 OEOE_t0816 - 19</sub> Cys tRNA
798601 798684 + 84 116490126 OEOE_t0851 - 15</sub> Leu tRNA
864352 864425 + 74 116490126 OEOE_t0921 - 20</sub> Trp tRNA
864428 864501 + 74 116490126 OEOE_t0922 - 09</sub> His tRNA
864540 864623 + 84 116490126 OEOE_t0923 - 15</sub> Leu tRNA
894078 894151 + 74 116490126 OEOE_t0955 - 11</sub> Arg tRNA
901908 901999 - 92 116490126 OEOE_t0967 - 08</sub> Ser tRNA
1021190 1021513 - 324 116490126 OEOE_r1091 - RNA_RNaseP_classB
1146569 1146661 - 93 116490126 OEOE_t1213 - 08</sub> Ser tRNA
1146741 1146814 - 74 116490126 OEOE_t1214 - 14</sub> Ile tRNA
1146817 1146887 - 71 116490126 OEOE_t1215 - 01</sub> Gly tRNA
1146908 1146980 - 73 116490126 OEOE_t1216 - 17</sub> Phe tRNA
1147012 1147086 - 75 116490126 OEOE_t1217 - 06</sub> Asp tRNA
1147143 1147216 - 74 116490126 OEOE_t1218 - 16</sub> Met tRNA
1147243 1147332 - 90 116490126 OEOE_t1219 - 08</sub> Ser tRNA
1147352 1147425 - 74 116490126 OEOE_t1220 - 16</sub> Met tRNA
1147439 1147512 - 74 116490126 OEOE_t1221 - 16</sub> Met tRNA
1147534 1147607 - 74 116490126 OEOE_t1222 - 03</sub> Pro tRNA
1147672 1147745 - 74 116490126 OEOE_t1223 - 11</sub> Arg tRNA
1147812 1147895 - 84 116490126 OEOE_t1224 - 15</sub> Leu tRNA
1147917 1147988 - 72 116490126 OEOE_t1225 - 01</sub> Gly tRNA
1148009 1148081 - 73 116490126 OEOE_t1226 - 12</sub> Thr tRNA
1148120 1148192 - 73 116490126 OEOE_t1227 - 13</sub> Val tRNA
1263744 1263827 - 84 116490126 OEOE_t1359 - 15</sub> Leu tRNA
1273728 1273763 - 36 116490126 OEOE_r1370 - 5S ribosomal RNA
1273860 1276747 - 2888 116490126 OEOE_r1371 - 23S ribosomal RNA
1276963 1277035 - 73 116490126 OEOE_t1372 - 02</sub> Ala tRNA
1277133 1278699 - 1567 116490126 OEOE_r1373 - 16S ribosomal RNA
1540760 1540832 - 73 116490126 OEOE_t1622 - 05</sub> Gln tRNA
1556286 1556359 - 74 116490126 OEOE_t1637 - 03</sub> Pro tRNA
1736852 1736924 + 73 116490126 OEOE_t1816 - 02</sub> Ala tRNA
1764949 1765020 - 72 116490126 OEOE_t1842 - 07</sub> Asn tRNA
1767500 1767582 + 83 116490126 OEOE_t1846 - 18</sub> Tyr tRNA
1767630 1767702 + 73 116490126 OEOE_t1847 - 05</sub> Gln tRNA

Материалы сообщества доступны в соответствии с условиями лицензии CC-BY-SA , если не указано иное.