LOCUS NC_007516 2510659 bp DNA circular BCT 16-JUN-2006
DEFINITION Synechococcus sp. CC9605, complete genome.
ACCESSION NC_007516
VERSION NC_007516.1 GI:78211558
KEYWORDS .
SOURCE Synechococcus sp. CC9605
ORGANISM Synechococcus sp. CC9605
Bacteria; Cyanobacteria; Chroococcales; Synechococcus.
REFERENCE 1 (bases 1 to 2510659)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Schmutz,J.,
Martinez,M., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Synechococcus sp. CC9605
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2510659)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (28-OCT-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2510659)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T.,
Hammon,N., Israni,S., Pitluck,S., Schmutz,J., Martinez,M.,
Larimer,F., Land,M., Ivanova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (27-JUL-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000110.
URL -- http://www.jgi.doe.gov
Source DNA and bacteria available from Brian Palenik
(bpalenik@ucsd.edu)
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-PGF
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 40886 | 40957 | - | 72 | 78211558 | Syncc9605_R0001 | - | 01 Gly tRNA |
| 81036 | 81107 | + | 72 | 78211558 | Syncc9605_R0002 | - | 01 Gly tRNA |
| 151785 | 152114 | - | 330 | 78211558 | Syncc9605_R0003 | - | RNA component of RNaseP |
| 152198 | 152271 | + | 74 | 78211558 | Syncc9605_R0004 | - | 11 Arg tRNA |
| 240013 | 240085 | + | 73 | 78211558 | Syncc9605_R0005 | - | Xaa tRNA |
| 259938 | 260011 | + | 74 | 78211558 | Syncc9605_R0006 | - | 11 Arg tRNA |
| 292703 | 292784 | + | 82 | 78211558 | Syncc9605_R0007 | - | 15 Leu tRNA |
| 300106 | 300178 | - | 73 | 78211558 | Syncc9605_R0008 | - | 02 Ala tRNA |
| 336548 | 336621 | + | 74 | 78211558 | Syncc9605_R0009 | - | 03 Pro tRNA |
| 354910 | 354998 | - | 89 | 78211558 | Syncc9605_R0010 | - | 08 Ser tRNA |
| 381452 | 381523 | + | 72 | 78211558 | Syncc9605_R0011 | - | 05 Gln tRNA |
| 394817 | 394890 | + | 74 | 78211558 | Syncc9605_R0012 | - | 11 Arg tRNA |
| 410669 | 410739 | + | 71 | 78211558 | Syncc9605_R0013 | - | 19 Cys tRNA |
| 443117 | 443192 | - | 76 | 78211558 | Syncc9605_R0014 | - | 17 Phe tRNA |
| 465663 | 465734 | - | 72 | 78211558 | Syncc9605_R0015 | - | 12 Thr tRNA |
| 473828 | 475267 | + | 1440 | 78211558 | Syncc9605_R0016 | - | 16S ribosomal RNA |
| 475473 | 475546 | + | 74 | 78211558 | Syncc9605_R0017 | - | 14 Ile tRNA |
| 475556 | 475628 | + | 73 | 78211558 | Syncc9605_R0018 | - | 02 Ala tRNA |
| 476063 | 478928 | + | 2866 | 78211558 | Syncc9605_R0019 | - | 23S ribosomal RNA |
| 479041 | 479154 | + | 114 | 78211558 | Syncc9605_R0020 | - | 5S ribosomal RNA |
| 494153 | 494224 | - | 72 | 78211558 | Syncc9605_R0021 | - | 12 Thr tRNA |
| 494235 | 494316 | - | 82 | 78211558 | Syncc9605_R0022 | - | 18 Tyr tRNA |
| 551438 | 551511 | - | 74 | 78211558 | Syncc9605_R0023 | - | 11 Arg tRNA |
| 604748 | 604819 | - | 72 | 78211558 | Syncc9605_R0024 | - | 13 Val tRNA |
| 619575 | 619648 | - | 74 | 78211558 | Syncc9605_R0025 | - | 06 Asp tRNA |
| 620089 | 620161 | - | 73 | 78211558 | Syncc9605_R0026 | - | 20 Trp tRNA |
| 778388 | 778474 | + | 87 | 78211558 | Syncc9605_R0027 | - | 08 Ser tRNA |
| 814916 | 815016 | + | 101 | 78211558 | Syncc9605_R0028 | - | SRP RNA; RNA component of signal recognition particle |
| 822296 | 822368 | - | 73 | 78211558 | Syncc9605_R0029 | - | 09 His tRNA |
| 835603 | 835684 | - | 82 | 78211558 | Syncc9605_R0030 | - | 15 Leu tRNA |
| 838685 | 838771 | + | 87 | 78211558 | Syncc9605_R0031 | - | 15 Leu tRNA |
| 895865 | 895937 | + | 73 | 78211558 | Syncc9605_R0032 | - | 02 Ala tRNA |
| 943285 | 943373 | - | 89 | 78211558 | Syncc9605_R0033 | - | 15 Leu tRNA |
| 1078026 | 1078099 | - | 74 | 78211558 | Syncc9605_R0034 | - | 03 Pro tRNA |
| 1192409 | 1192495 | - | 87 | 78211558 | Syncc9605_R0035 | - | 08 Ser tRNA |
| 1240721 | 1240794 | + | 74 | 78211558 | Syncc9605_R0036 | - | 16 Met tRNA |
| 1315834 | 1315920 | - | 87 | 78211558 | Syncc9605_R0037 | - | 08 Ser tRNA |
| 1546958 | 1547029 | + | 72 | 78211558 | Syncc9605_R0038 | - | 10 Lys tRNA |
| 1548406 | 1548479 | + | 74 | 78211558 | Syncc9605_R0039 | - | 03 Pro tRNA |
| 1654070 | 1654146 | - | 77 | 78211558 | Syncc9605_R0040 | - | 16 Met tRNA |
| 1737787 | 1737859 | + | 73 | 78211558 | Syncc9605_R0041 | - | 04 Glu tRNA |
| 1907303 | 1907375 | + | 73 | 78211558 | Syncc9605_R0042 | - | 12 Thr tRNA |
| 1919692 | 1919762 | - | 71 | 78211558 | Syncc9605_R0043 | - | 01 Gly tRNA |
| 1971387 | 1971458 | + | 72 | 78211558 | Syncc9605_R0044 | - | 13 Val tRNA |
| 2063339 | 2063593 | - | 255 | 78211558 | Syncc9605_R0045 | - | tmRNA |
| 2073505 | 2073586 | - | 82 | 78211558 | Syncc9605_R0046 | - | 15 Leu tRNA |
| 2135706 | 2135819 | - | 114 | 78211558 | Syncc9605_R0047 | - | 5S ribosomal RNA |
| 2135932 | 2138797 | - | 2866 | 78211558 | Syncc9605_R0048 | - | 23S ribosomal RNA |
| 2139232 | 2139304 | - | 73 | 78211558 | Syncc9605_R0049 | - | 02 Ala tRNA |
| 2139314 | 2139387 | - | 74 | 78211558 | Syncc9605_R0050 | - | 14 Ile tRNA |
| 2139593 | 2141032 | - | 1440 | 78211558 | Syncc9605_R0051 | - | 16S ribosomal RNA |
| 2191230 | 2191301 | + | 72 | 78211558 | Syncc9605_R0052 | - | 07 Asn tRNA |
| 2385485 | 2385555 | - | 71 | 78211558 | Syncc9605_R0053 | - | Xaa tRNA |
| 2400151 | 2400222 | - | 72 | 78211558 | Syncc9605_R0054 | - | 13 Val tRNA |