LOCUS NC_002570 4202352 bp DNA circular BCT 03-DEC-2005
DEFINITION Bacillus halodurans C-125, complete genome.
ACCESSION NC_002570
VERSION NC_002570.2 GI:57596592
KEYWORDS .
SOURCE Bacillus halodurans C-125
ORGANISM Bacillus halodurans C-125
Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus.
REFERENCE 1 (bases 1 to 4202352)
AUTHORS Takami,H., Nakasone,K., Takaki,Y., Maeno,G., Sasaki,R., Masui,N.,
Fuji,F., Hirama,C., Nakamura,Y., Ogasawara,N., Kuhara,S. and
Horikoshi,K.
TITLE Complete genome sequence of the alkaliphilic bacterium Bacillus
halodurans and genomic sequence comparison with Bacillus subtilis
JOURNAL Nucleic Acids Res. 28 (21), 4317-4331 (2000)
PUBMED 11058132
REFERENCE 2 (bases 1 to 4202352)
AUTHORS Nakasone,K., Masui,N., Takaki,Y., Sasaki,R., Maeno,G., Sakiyama,T.,
Hirama,C., Fuji,F. and Takami,H.
TITLE Characterization and comparative study of the rrn operons of
alkaliphilic Bacillus halodurans C-125
JOURNAL Extremophiles 4 (4), 209-214 (2000)
PUBMED 10972189
REFERENCE 3 (sites)
AUTHORS Takami,H. and Horikoshi,K.
TITLE Analysis of the genome of an alkaliphilic Bacillus strain from an
industrial point of view
JOURNAL Extremophiles 4 (2), 99-108 (2000)
PUBMED 10805564
REFERENCE 4 (sites)
AUTHORS Takami,H., Takaki,Y., Nakasone,K., Sakiyama,T., Maeno,G.,
Sasaki,R., Hirama,C., Fuji,F. and Masui,N.
TITLE Genetic analysis of the chromosome of alkaliphilic Bacillus
halodurans C-125
JOURNAL Extremophiles 3 (3), 227-233 (1999)
PUBMED 10484179
REFERENCE 5 (sites)
AUTHORS Takami,H., Masui,N., Nakasone,K. and Horikoshi,K.
TITLE Replication origin region of the chromosome of alkaliphilic
Bacillus halodurans C-125
JOURNAL Biosci. Biotechnol. Biochem. 63 (6), 1134-1137 (1999)
PUBMED 10427704
REFERENCE 6 (sites)
AUTHORS Takami,H., Takaki,Y., Nakasone,K., Hirama,C., Inoue,A. and
Horikoshi,K.
TITLE Sequence analysis of a 32-kb region including the major ribosomal
protein gene clusters from alkaliphilic Bacillus sp. strain C-125
JOURNAL Biosci. Biotechnol. Biochem. 63 (2), 452-455 (1999)
PUBMED 10192928
REFERENCE 7 (sites)
AUTHORS Takami,H., Nakasone,K., Ogasawara,N., Hirama,C., Nakamura,Y.,
Masui,N., Fuji,F., Takaki,Y., Inoue,A. and Horikoshi,K.
TITLE Sequencing of three lambda clones from the genome of alkaliphilic
Bacillus sp. strain C-125
JOURNAL Extremophiles 3 (1), 29-34 (1999)
PUBMED 10086842
REFERENCE 8 (sites)
AUTHORS Takami,H., Nakasone,K., Hirama,C., Takaki,Y., Masui,N., Fuji,F.,
Nakamura,Y. and Inoue,A.
TITLE An improved physical and genetic map of the genome of alkaliphilic
Bacillus sp. C-125
JOURNAL Extremophiles 3 (1), 21-28 (1999)
PUBMED 10086841
REFERENCE 9 (sites)
AUTHORS Takami,H.
TITLE Genome analysis of facultatively alkalihilic Bacillus halodurans
C-125
JOURNAL (in) Extremophiles in deep-sea environments (Ed.);
. HORIKOSHI, K. TSUJII;
: 249-284; Springer-Verlag (1999)
REFERENCE 10 (sites)
AUTHORS Takami,H. and Horikoshi,K.
TITLE Reidentification of facultatively alkaliphilic Bacillus sp. C-125
to Bacillus halodurans
JOURNAL Biosci. Biotechnol. Biochem. 63, 943-945 (1999)
REFERENCE 11 (bases 1 to 4202352)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (13-SEP-2001) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 12 (bases 1 to 4202352)
CONSRTM NCBI Microbial Genomes Annotation Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2001) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 13 (bases 1 to 4202352)
AUTHORS Takami,H. and Takaki,Y.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2000) Japan Marine Science and Technology Center,
Deep-sea Microorganisms Research Group, 2-15 Natsushima, Yokosuka,
Kanagawa 237-0061, Japan
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from BA000004.
On Jan 12, 2005 this sequence version replaced gi:15612563.
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 22819 | 24370 | + | 1552 | 57596592 | BHr001 | - | 16S ribosomal RNA |
| 25054 | 27992 | + | 2939 | 57596592 | BHr002 | - | 23S ribosomal RNA |
| 28401 | 28516 | + | 116 | 57596592 | BHr003 | - | 5S ribosomal RNA |
| 45480 | 45572 | + | 93 | 57596592 | BHt001 | - | 08 Ser tRNA |
| 50588 | 52139 | + | 1552 | 57596592 | BHr004 | - | 16S ribosomal RNA |
| 52991 | 55929 | + | 2939 | 57596592 | BHr005 | - | 23S ribosomal RNA |
| 56235 | 56350 | + | 116 | 57596592 | BHr006 | - | 5S ribosomal RNA |
| 94883 | 94956 | + | 74 | 57596592 | BHt002 | - | 16 Met tRNA |
| 117374 | 118925 | + | 1552 | 57596592 | BHr007 | - | 16S ribosomal RNA |
| 119378 | 119454 | + | 77 | 57596592 | BHt003 | - | 14 Ile tRNA |
| 119466 | 119541 | + | 76 | 57596592 | BHt004 | - | 02 Ala tRNA |
| 119924 | 122862 | + | 2939 | 57596592 | BHr008 | - | 23S ribosomal RNA |
| 123273 | 123388 | + | 116 | 57596592 | BHr009 | - | 5S ribosomal RNA |
| 123398 | 123473 | + | 76 | 57596592 | BHt005 | - | 13 Val tRNA |
| 123515 | 123587 | + | 73 | 57596592 | BHt006 | - | 12 Thr tRNA |
| 123595 | 123670 | + | 76 | 57596592 | BHt007 | - | 10 Lys tRNA |
| 123679 | 123764 | + | 86 | 57596592 | BHt008 | - | 15 Leu tRNA |
| 123771 | 123845 | + | 75 | 57596592 | BHt009 | - | 01 Gly tRNA |
| 123869 | 123957 | + | 89 | 57596592 | BHt010 | - | 15 Leu tRNA |
| 123973 | 124049 | + | 77 | 57596592 | BHt011 | - | 11 Arg tRNA |
| 124055 | 124131 | + | 77 | 57596592 | BHt012 | - | 03 Pro tRNA |
| 124135 | 124210 | + | 76 | 57596592 | BHt013 | - | 02 Ala tRNA |
| 124393 | 125945 | + | 1553 | 57596592 | BHr010 | - | 16S ribosomal RNA |
| 126753 | 129691 | + | 2939 | 57596592 | BHr011 | - | 23S ribosomal RNA |
| 129997 | 130112 | + | 116 | 57596592 | BHr012 | - | 5S ribosomal RNA |
| 261929 | 263480 | + | 1552 | 57596592 | BHr013 | - | 16S ribosomal RNA |
| 264163 | 267101 | + | 2939 | 57596592 | BHr014 | - | 23S ribosomal RNA |
| 267406 | 267521 | + | 116 | 57596592 | BHr015 | - | 5S ribosomal RNA |
| 267531 | 267605 | + | 75 | 57596592 | BHt014 | - | 07 Asn tRNA |
| 267613 | 267685 | + | 73 | 57596592 | BHt015 | - | 12 Thr tRNA |
| 282063 | 282137 | + | 75 | 57596592 | BHt016 | - | 04 Glu tRNA |
| 282231 | 282306 | + | 76 | 57596592 | BHt017 | - | 13 Val tRNA |
| 282562 | 282634 | + | 73 | 57596592 | BHt018 | - | 12 Thr tRNA |
| 282656 | 282740 | + | 85 | 57596592 | BHt019 | - | 18 Tyr tRNA |
| 282749 | 282823 | + | 75 | 57596592 | BHt020 | - | 05 Gln tRNA |
| 282887 | 282962 | + | 76 | 57596592 | BHt021 | - | 10 Lys tRNA |
| 282970 | 283044 | + | 75 | 57596592 | BHt022 | - | 01 Gly tRNA |
| 283049 | 283124 | + | 76 | 57596592 | BHt023 | - | 02 Ala tRNA |
| 558019 | 558093 | + | 75 | 57596592 | BHt024 | - | 07 Asn tRNA |
| 558096 | 558186 | + | 91 | 57596592 | BHt025 | - | 08 Ser tRNA |
| 558197 | 558271 | + | 75 | 57596592 | BHt026 | - | 04 Glu tRNA |
| 558305 | 558380 | + | 76 | 57596592 | BHt027 | - | 13 Val tRNA |
| 558388 | 558464 | + | 77 | 57596592 | BHt028 | - | 06 Asp tRNA |
| 558492 | 558574 | + | 83 | 57596592 | BHt029 | - | 15 Leu tRNA |
| 558590 | 558673 | + | 84 | 57596592 | BHt030 | - | 15 Leu tRNA |
| 558683 | 558759 | + | 77 | 57596592 | BHt031 | - | 11 Arg tRNA |
| 558780 | 558856 | + | 77 | 57596592 | BHt032 | - | 03 Pro tRNA |
| 558863 | 558936 | + | 74 | 57596592 | BHt033 | - | 01 Gly tRNA |
| 558976 | 559052 | + | 77 | 57596592 | BHt034 | - | 14 Ile tRNA |
| 559243 | 560794 | + | 1552 | 57596592 | BHr016 | - | 16S ribosomal RNA |
| 561522 | 564460 | + | 2939 | 57596592 | BHr017 | - | 23S ribosomal RNA |
| 564869 | 564984 | + | 116 | 57596592 | BHr018 | - | 5S ribosomal RNA |
| 577146 | 577261 | + | 116 | 57596592 | BHr019 | - | 5S ribosomal RNA |
| 577380 | 577453 | + | 74 | 57596592 | BHt035 | - | 16 Met tRNA |
| 656197 | 657748 | + | 1552 | 57596592 | BHr020 | - | 16S ribosomal RNA |
| 658205 | 658281 | + | 77 | 57596592 | BHt036 | - | 14 Ile tRNA |
| 658293 | 658368 | + | 76 | 57596592 | BHt037 | - | 02 Ala tRNA |
| 658720 | 661658 | + | 2939 | 57596592 | BHr021 | - | 23S ribosomal RNA |
| 662067 | 662182 | + | 116 | 57596592 | BHr022 | - | 5S ribosomal RNA |
| 1017921 | 1019473 | + | 1553 | 57596592 | BHr023 | - | 16S ribosomal RNA |
| 1020325 | 1023263 | + | 2939 | 57596592 | BHr024 | - | 23S ribosomal RNA |
| 1023672 | 1023787 | + | 116 | 57596592 | BHr025 | - | 5S ribosomal RNA |
| 1023797 | 1023871 | + | 75 | 57596592 | BHt038 | - | 07 Asn tRNA |
| 1023873 | 1023966 | + | 94 | 57596592 | BHt039 | - | 08 Ser tRNA |
| 1023980 | 1024051 | + | 72 | 57596592 | BHt040 | - | 04 Glu tRNA |
| 1024086 | 1024161 | + | 76 | 57596592 | BHt041 | - | 13 Val tRNA |
| 1024337 | 1024413 | + | 77 | 57596592 | BHt042 | - | 16 Met tRNA |
| 1024418 | 1024494 | + | 77 | 57596592 | BHt043 | - | 06 Asp tRNA |
| 1024505 | 1024580 | + | 76 | 57596592 | BHt044 | - | 17 Phe tRNA |
| 1024586 | 1024661 | + | 76 | 57596592 | BHt045 | - | 12 Thr tRNA |
| 1024716 | 1024800 | + | 85 | 57596592 | BHt046 | - | 18 Tyr tRNA |
| 1024812 | 1024885 | + | 74 | 57596592 | BHt047 | - | 20 Trp tRNA |
| 1024904 | 1024979 | + | 76 | 57596592 | BHt048 | - | 09 His tRNA |
| 1024993 | 1025067 | + | 75 | 57596592 | BHt049 | - | 05 Gln tRNA |
| 1025072 | 1025146 | + | 75 | 57596592 | BHt050 | - | 01 Gly tRNA |
| 1025154 | 1025224 | + | 71 | 57596592 | BHt051 | - | 19 Cys tRNA |
| 1025251 | 1025339 | + | 89 | 57596592 | BHt052 | - | 15 Leu tRNA |
| 1025355 | 1025431 | + | 77 | 57596592 | BHt053 | - | 11 Arg tRNA |
| 1039353 | 1039438 | + | 86 | 57596592 | BHt054 | - | 15 Leu tRNA |
| 1491438 | 1491512 | + | 75 | 57596592 | BHt055 | - | 07 Asn tRNA |
| 1491519 | 1491592 | + | 74 | 57596592 | BHt056 | - | 16 Met tRNA |
| 1491644 | 1491720 | + | 77 | 57596592 | BHt057 | - | 16 Met tRNA |
| 1491735 | 1491827 | + | 93 | 57596592 | BHt058 | - | 08 Ser tRNA |
| 2860216 | 2860288 | - | 73 | 57596592 | BHt059 | - | 13 Val tRNA |
| 2876632 | 2876706 | - | 75 | 57596592 | BHt060 | - | 11 Arg tRNA |
| 2948437 | 2948507 | - | 71 | 57596592 | BHt061 | - | 01 Gly tRNA |
| 2948693 | 2948769 | - | 77 | 57596592 | BHt062 | - | 11 Arg tRNA |
| 2948771 | 2948845 | - | 75 | 57596592 | BHt063 | - | 01 Gly tRNA |
| 2948850 | 2948924 | - | 75 | 57596592 | BHt064 | - | 05 Gln tRNA |
| 2948940 | 2949015 | - | 76 | 57596592 | BHt065 | - | 09 His tRNA |
| 2949028 | 2949112 | - | 85 | 57596592 | BHt066 | - | 18 Tyr tRNA |
| 2949118 | 2949194 | - | 77 | 57596592 | BHt067 | - | 16 Met tRNA |
| 2949366 | 2949458 | - | 93 | 57596592 | BHt068 | - | 08 Ser tRNA |
| 2949476 | 2949551 | - | 76 | 57596592 | BHt069 | - | 02 Ala tRNA |
| 2952402 | 2952473 | + | 72 | 57596592 | BHt070 | - | 05 Gln tRNA |
| 3188039 | 3188115 | - | 77 | 57596592 | BHt071 | - | 11 Arg tRNA |
| 3188120 | 3188193 | - | 74 | 57596592 | BHt072 | - | 01 Gly tRNA |
| 3457775 | 3457850 | - | 76 | 57596592 | BHt073 | - | 02 Ala tRNA |
| 3617681 | 3618103 | - | 423 | 57596592 | BHs001 | - | RNA component of ribonuclease P |
| 3652245 | 3652598 | - | 354 | 57596592 | BHs002 | - | small stable 10Sa RNA |
| 4163186 | 4163258 | - | 73 | 57596592 | BHt074 | - | 12 Thr tRNA |
| 4163644 | 4163719 | - | 76 | 57596592 | BHt075 | - | 17 Phe tRNA |
| 4163729 | 4163805 | - | 77 | 57596592 | BHt076 | - | 06 Asp tRNA |
| 4163816 | 4163890 | - | 75 | 57596592 | BHt077 | - | 04 Glu tRNA |
| 4163900 | 4163975 | - | 76 | 57596592 | BHt078 | - | 10 Lys tRNA |